ELSI

研究・活動

研究者

Jakob Lykke Andersen

Jakob Lykke Andersen
氏 名
Jakob Lykke Andersen
役 職
研究員
専門分野
計算科学、アルゴリズム化学情報学
E-mail
jlandersen_at_elsi.jp
LINK

https://members.elsi.jp/~jlandersen/

主要業績/受賞歴

In silico Support for Eschenmoser’s Glyoxylate Scenario, Jakob L. Andersen, Christoph Flamm, Daniel Merkle, and Peter F. Stadler. Israel Journal of Chemistry, 55(8):919-933, 2015.

50 Shades of Rule Composition — From Chemical Reactions to Higher Levels of Abstraction, Jakob L. Andersen, Christoph Flamm, Daniel Merkle, and Peter F. Stadler. Formal Methods in Macro-Biology, 8738:117-135, 2014.

Conference version: Towards an Optimal DNA-Templated Molecular Assembler, Jakob L. Andersen, Christoph Flamm, Martin M. Hanczyc, and Daniel Merkle. ALIFE 14: The Fourteenth Conference on the Synthesis and Simulation of Living Systems, 14:557-564, 2014.

Journal version: Towards Optimal DNA-Templated Computing,Jakob L. Andersen, Christoph Flamm, Martin M. Hanczyc, and Daniel Merkle. International Journal of Unconventional Computing, 11(3-4):185-203, 2015.

Generic Strategies for Chemical Space Exploration, Jakob L. Andersen, Christoph Flamm, Daniel Merkle, and Peter F. Stadler. International Journal of Computational Biology and Drug Design, 7(2/3):225-258, 2014.

Navigating the Chemical Space of HCN Polymerization and Hydrolysis: Guiding Graph Grammars by Mass Spectrometry Data., Jakob L. Andersen, Tommy Andersen, Christoph Flamm, Martin M. Hanczyc, Daniel Merkle, and Peter F. Stadler. Entropy, 15(10):4066-4083, 2013.

Inferring chemical reaction patterns using rule composition in graph grammars., Jakob L. Andersen, Christoph Flamm, Daniel Merkle, and Peter F. Stadler. Journal of Systems Chemistry, 4(1):4, 2013.

Maximizing output and recognizing autocatalysis in chemical reaction networks is NP-complete., Jakob L. Andersen, Christoph Flamm, Daniel Merkle, and Peter F. Stadler. Journal of Systems Chemistry, 3(1):1, 2012.

研究概要

I am a postdoc in the ELSI Origins Network (EON), where I work on formal methods for modelling and analysing chemical systems (algorithmic cheminformatics). I am in general interested in algorithmics, and in particular graph algorithms.

Before joining EON I was a Ph.D. student in computer science at the University of Southern Denmark and Universität Leipzig (cotutelle). My advisors were Daniel Merkle and Peter F. Stadler, and the title of my project was “Analysis of Generative Chemistries”.